ythdf3 mutants (Addgene inc)
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Ythdf3 Mutants, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ythdf3+mutants/YTHDF3+(Plasmid+%23156133)/pmc11407899-297-8-24
Average 93 stars, based on 4 article reviews
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1) Product Images from "Ythdf m 6 A Readers Function Redundantly during Zebrafish Development"
Article Title: Ythdf m 6 A Readers Function Redundantly during Zebrafish Development
Journal: Cell reports
doi: 10.1016/j.celrep.2020.108598
Figure Legend Snippet: (A) Numbers of male and female fish of each genotype. Sibling control and double ythdf2;ythdf3 homozygotes were offspring from the same cross, depicted on top. (B) Gonad histology of double homozygous ( ythdf2 −/− ; ythdf3 −/− ) and sibling control fish from the cross in (A). At 27 dpf, mutants exhibit less developed juvenile ovaries than controls. At 35 dpf, 6 sibling fish had adult ovaries and 8 had testes, while all 12 ythdf2 −/− ; ythdf3 −/− fish had testes. I, stage I oocytes; II, stage II oocytes; triangle, apoptotic oocyte; sg, spermatogonia; sc, spermatocytes. n, replicate number with similar gonads. Scale bars, 40 μm. (C) Numbers of male and female fish of each genotype, following treatment with 17α-ethynylestradiol (EE2). Fish were from the same cross as in (A).
Techniques Used: Control
Figure Legend Snippet: (A) MZ ythdf2 ;MZ ythdf3 , background-matched wild-type, and unrelated TU-AB wild-type zebrafish embryos develop at similar rates. Parents of mutant and background-matched control embryos were 17α-ethynylestradiol treated. n, replicate number of embryos at same developmental stage. Scale bars, 500 μm. (B) Biplot of expression (log 2 RPKM) of maternal (n = 13,642) and m 6 A-modified (n = 2,280) mRNAs between wild-type and MZ ythdf2 ;MZ ythdf3 , from 6 hpf poly(A) mRNA-seq. Dashed lines, 2-fold change. (C) Cumulative distribution of fold changes in maternal mRNA abundance (log 2 RPKM) between 4 and 0 hpf in MZ ythdf2 ;MZ ythdf3 embryos, for m 6 A-modified (n = 708) and non-modified (n = 841) mRNAs, from poly(A) mRNA-seq. p values computed by a Mann-Whitney U test. (D) Schematic of cross and genotyping strategy for triple Ythdf mutants. Female fish ( ythdf1 +/− ; ythdf2 −/− ; ythdf3 +/− ) were crossed to males ( ythdf1 −/− ; ythdf -+/− ; ythdf3 −/− ) to generate triple homozygotes (1 of 8 possible genotypes). Every 3 days, 48 larvae were genotyped, with 200 more fish genotyped at 30 dpf. (E) Percentage of triple heterozygous (het) or triple homozygous (homo) fish during development. Dotted line, expected percentage (12.5%) of each genotype, from cross in (D). (F) Number of fish with each genotype from cross in (D) at 30 dpf. For each ythdf allele: filled circle, heterozygous; m, homozygous. Dotted line, expected fish number (25), equal for all genotypes.
Techniques Used: Mutagenesis, Control, Expressing, Modification, MANN-WHITNEY
Figure Legend Snippet: KEY RESOURCES TABLE
Techniques Used: Recombinant, Nick Translation, SYBR Green Assay, RNA Extraction, Reverse Transcription, Mutagenesis, Software
Related Articles
Recombinant:Article Title: Ythdf m 6 A Readers Function Redundantly during Zebrafish Development. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies rabbit anti-Ythdf1 this manuscript Ynzyme custom order rabbit anti-Ythdf2 this manuscript Ynzyme custom order rabbit anti-Ythdf3 this manuscript Ynzyme custom order rabbit anti-Actin Abcam Cat# ab8227; RRID: AB_2305186 goat anti-rabbit IgG, (H+L) HRP conjugate Millipore Cat# AP307P; RRID: AB_92641 Chemicals, Peptides, and Recombinant Proteins triptolide Sigma-aldrich Cat# T3652 a-amanitin Sigma-aldrich Cat# A2263 low melt agarose AmericanBio Cat# CAS: 9012-36-6 N6-methyladenosine 5’-triphosphate TriLink Cat# N-1013-5 m7G(50)ppp(50)G RNA cap structure analog New England BioLabs Cat# S1404S 17 a-ethynylestradiol (EE2) Sigma-Aldrich Cat# E4876 Critical Commercial Assays AmpliScribe-T7-Flash Transcription kit Epicenter Cat# ASF3257 HiScribe SP6 RNA Synthesis Kit New England BioLabs Cat# E2070S mMessage mMachine SP6 Transcription Kit Invitrogen Cat# 74104 Nick Translation Kit Sigma-Aldrich Cat# 10976776001 Poly(A) tailing kit Invitrogen Cat# AM1350 Power SYBR Green PCR Master Mix Applied Biosystems Cat# 4368706 Protein A Dynabeads Invitrogen Cat# 10008D RNeasy RNA extraction kit QIAGEN Cat# AM1340 Superscript III Reverse Transcriptase kit Invitrogen Cat# 18080093 TRIzol reagent Invitrogen Cat# 15596-018 Deposited Data mRNA-sequencing of MZythdf2, MZythdf2;MZythdf3, or MZdicer mutants this manuscript SRP297464 mRNA-sequencing of MZythdf2 mutants Zhao et al., 2017 GSE79213 mRNA-sequencing time course of zebrafish embryos Vejnar et al., 2019 Beaudoin et al., 2018 Bazzini et al., 2016 SRP189512 SRP149556 SRP072296 PAL-sequencing in zebrafish embryos Subtelny et al., 2014 GSE52809 TAIL-sequencing in zebrafish embryos Chang et al., 2018 https://doi.org/10.5281/zenodo.2640028 Experimental Models: Organisms/Strains Zebrafish: TU-AB and TLF strains Zebrafish International Resource Center N/A Zebrafish: miR-430 cluster deletion mutant Liu et al., 2013 N/A Zebrafish: ythdf2 8bp mutants Zhao et al., 2017 N/A Zebrafish: dicer mutants Giraldez et al., 2006 N/A Zebrafish: mettl3 mutants this manuscript N/A Zebrafish: mettl14 mutants this manuscript N/A Zebrafish: ythdf1 mutants this manuscript N/A Zebrafish: ythdf2 223bp mutants this manuscript N/A (Continued on next page) Cell Reports 33, 108598, December 29, 2020 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Zebrafish: Software:Article Title: Ythdf m 6 A Readers Function Redundantly during Zebrafish Development. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies rabbit anti-Ythdf1 this manuscript Ynzyme custom order rabbit anti-Ythdf2 this manuscript Ynzyme custom order rabbit anti-Ythdf3 this manuscript Ynzyme custom order rabbit anti-Actin Abcam Cat# ab8227; RRID: AB_2305186 goat anti-rabbit IgG, (H+L) HRP conjugate Millipore Cat# AP307P; RRID: AB_92641 Chemicals, Peptides, and Recombinant Proteins triptolide Sigma-aldrich Cat# T3652 a-amanitin Sigma-aldrich Cat# A2263 low melt agarose AmericanBio Cat# CAS: 9012-36-6 N6-methyladenosine 5’-triphosphate TriLink Cat# N-1013-5 m7G(50)ppp(50)G RNA cap structure analog New England BioLabs Cat# S1404S 17 a-ethynylestradiol (EE2) Sigma-Aldrich Cat# E4876 Critical Commercial Assays AmpliScribe-T7-Flash Transcription kit Epicenter Cat# ASF3257 HiScribe SP6 RNA Synthesis Kit New England BioLabs Cat# E2070S mMessage mMachine SP6 Transcription Kit Invitrogen Cat# 74104 Nick Translation Kit Sigma-Aldrich Cat# 10976776001 Poly(A) tailing kit Invitrogen Cat# AM1350 Power SYBR Green PCR Master Mix Applied Biosystems Cat# 4368706 Protein A Dynabeads Invitrogen Cat# 10008D RNeasy RNA extraction kit QIAGEN Cat# AM1340 Superscript III Reverse Transcriptase kit Invitrogen Cat# 18080093 TRIzol reagent Invitrogen Cat# 15596-018 Deposited Data mRNA-sequencing of MZythdf2, MZythdf2;MZythdf3, or MZdicer mutants this manuscript SRP297464 mRNA-sequencing of MZythdf2 mutants Zhao et al., 2017 GSE79213 mRNA-sequencing time course of zebrafish embryos Vejnar et al., 2019 Beaudoin et al., 2018 Bazzini et al., 2016 SRP189512 SRP149556 SRP072296 PAL-sequencing in zebrafish embryos Subtelny et al., 2014 GSE52809 TAIL-sequencing in zebrafish embryos Chang et al., 2018 https://doi.org/10.5281/zenodo.2640028 Experimental Models: Organisms/Strains Zebrafish: TU-AB and TLF strains Zebrafish International Resource Center N/A Zebrafish: miR-430 cluster deletion mutant Liu et al., 2013 N/A Zebrafish: ythdf2 8bp mutants Zhao et al., 2017 N/A Zebrafish: dicer mutants Giraldez et al., 2006 N/A Zebrafish: mettl3 mutants this manuscript N/A Zebrafish: mettl14 mutants this manuscript N/A Zebrafish: ythdf1 mutants this manuscript N/A Zebrafish: ythdf2 223bp mutants this manuscript N/A (Continued on next page) Cell Reports 33, 108598, December 29, 2020 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Zebrafish: Plasmid Preparation:Article Title: Ythdf m 6 A Readers Function Redundantly during Zebrafish Development Article Snippet: After PCR amplification, products were purified using QIAquick PCR purification kit (QIAGEN, 28104). sgRNAs were synthesized from the purified PCR product by T7 IVT using an AmpliScribe-T7-Flash Transcription kit (Epicenter, ASF3257), reaction at 37°C for 6 h). sgRNAs were DNase-treated, purified by sodium acetate and ethanol precipitation, and checked for RNA integrity by agarose gel electrophoresis. .. For gene editing to generate ythdf2 −223/−223 and Synthesized:Article Title: Ythdf m 6 A Readers Function Redundantly during Zebrafish Development Article Snippet: After PCR amplification, products were purified using QIAquick PCR purification kit (QIAGEN, 28104). sgRNAs were synthesized from the purified PCR product by T7 IVT using an AmpliScribe-T7-Flash Transcription kit (Epicenter, ASF3257), reaction at 37°C for 6 h). sgRNAs were DNase-treated, purified by sodium acetate and ethanol precipitation, and checked for RNA integrity by agarose gel electrophoresis. .. For gene editing to generate ythdf2 −223/−223 and |